..:: Cavanagh lab ::..

What the Cavanagh lab is all about

The Cavanagh lab is generally interested in how the specific structure and inherent flexibility of proteins helps them carry out their biological roles.

For a few years and with some success, our main focus has been on proteins involved in bacterial response/protection and the development of infectious disease. These are proteins that enable bacteria survive in difficult circumstances/environments and help them reach their pathogenic potential. The main types of proteins we study are response regulator proteins and transition state regulator proteins. Please see our 'Research' section for a little more information.

We are also very interested in neurodegenerative processes such as Alzheimer's disease. We have been studying the role of the calcium-binding protein calbindin D28K in suppressing the onset of Alzheimer's. Calbindin D28K appears to regulate both the amyloid and neurofibrillary tangle pathologies that define the disease.

Most recently we have been collaborating with the group of Christian Melander here at NC State, in developing small, non-toxic molecules that both inhibit and disperse highly resistant bacterial biofilms. Our compounds are 100% effective against all Gram negative and Gram positive biofilms so far tested. Approximately 80% of all bacterial infections are from bacteria in the biofilm state.

In addition, we have shown these small molecules to have the remarkable property of being able to re-sensitize bacteria to the antibiotics to which they have become resistant. For example when we add our compounds to MRSA (methicillin resistant staphylococcus aureus), the bacteria are suddenly susceptible to methicillin treatment once more.

We use NMR as our big platform technology, but we are pretty well-rounded when it comes to addressing our research problems. We'll try anything. Consequently some sophisticated mass spectrometry is becoming a major player in our work. We employ just about every biophysical technique you can think of and we're pretty decent computational modelers. Of course there is a lot of molecular biology and genetic work being done too and we have recently begun working with Laura Mathies at NC State in developing toxicological screens using C. elegans.

Recent Publications

Dihydrooroidin: A Marine Natural Product Congener as an Effective Non-Toxic Antifouling Agent in Marine-Based Paints. Melander, C, Moeller, P.D.R., Ballard, T.E., Richards, J.J., Huigens, R.W., and Cavanagh, J. International Biodeterioration and Biodegradation In press

Co-evolving motions at protein-protein interfaces of two-component signaling systems identified by covariance analysis. Szurmant H, Bobay BG, White RA, Sullivan DM, Thompson RJ, Hwa T, Hoch JA, Cavanagh J. Biochemistry Jul 29;47(30):7782-4

Control of bacterial biofilms with marine alkaloid derivatives. Huigens RW 3rd, Ma L, Gambino C, Moeller PD, Basso A, Cavanagh J, Wozniak DJ, Melander C. Mol Biosyst., (2008) 614-21

Inhibition and dispersion of proteobacterial biofilms. Justin J. Richards, Robert W. Huigens III, T. Eric Ballard, Anne Basso, John Cavanagh and Christian Melander Chem Commun., (2008) 1698-1700

Targeting RNA with cysteine-constrained peptides. Virginia A. Burns, Benjamin G. Bobay, Anne Basso, John Cavanagh, Christian Melander Bioorg Med Chem Lett. (2007)

NMR assignment of the N-terminal repeat domain of Bacillus subtilis ClpC. Kojetin D.J., McLaughlin P.D., Thompson R.J., Venters R.A, Rance M., Cavanagh J. J of Bio NMR. (2007)

Tandem mass spectrometry acquisition approaches to enhance identifcation of protein-protein interactions using low-energy collision-induced dissociative chemical crosslinking reagents. Soderblom E.J., Bobay B.G., Cavanagh J., Goshe M.B. Rapid Communications in Mass Spec. (2007) 21: 3395-3408

Peptide binding proclivities of calcium loaded calbindin-D28k. Kordys DR, Bobay BG, Thompson RJ, Venters RA, Cavanagh J. FEBS Letters (2007) 581, : 4778-4782

Abh and AbrB control of Bacillus subtilis antimicrobial gene expression. Strauch MA, Bobay BG, Cavanagh J, Yao F, Wilson A, Breton YL. Journal of Bacteriology (2007)